Harshini Suresha

GenomeSearch

High-Performance Genomic Sequence Search, Indexing, Scheduling & Data Management

Year2026
LocationIndependent software project
TagsSmith–Waterman, k-mers, DAG scheduling, PostgreSQL
LinksWebsiteAppGitHubColab
harshini-suresha.github.io/genome-searchOpen harshini-suresha.github.io/genome-search ↗
Screenshot of the GenomeSearch website

K-mer indexing, Smith–Waterman alignment, a DAG workflow scheduler, a concurrent execution engine and a PostgreSQL store, benchmarked on real NCBI RefSeq genomes.

Jan 2026 – May 2026 at Independent software project.

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